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| Home | Genome information | SSR | Gene Ontology | Genome Browser | ||
Kaew 007 draft genome information
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|
number |
n50 |
Longest |
Total bases |
|
Contig |
910,171 |
8,374 |
222,220 |
617,793,076 |
|
Scaffold |
85,963 |
10,291 |
252,508 |
562,429,618 |
RepeatMasker information
|
number of elements |
length occupied (bp) |
percentage of sequence |
||
|
Retroelements |
61089 |
52194330 |
9.28% |
|
|
SINEs: |
15 |
1404 |
0% |
|
|
Penelope |
7 |
486 |
0% |
|
|
LINEs: |
3429 |
893151 |
0.16% |
|
|
LTR elements: |
57645 |
51299775 |
9.12% |
|
|
DNA transposons |
23125 |
4710456 |
0.84% |
|
|
hobo-Activator |
12738 |
3163794 |
0.56% |
|
|
Tc1-IS630-Pogo |
136 |
18919 |
0% |
|
|
Tourist/Harbinger |
567 |
78016 |
0.01% |
|
|
Other (Mirage,P-element,
Transib) |
2 |
102 |
0% |
|
|
Unclassified: |
3198 |
972721 |
0.17% |
|
|
Total interspersed repeats: |
57877507 |
10.29% |
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|
Small RNA: |
998 |
120673 |
0.02% |
|
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Satellites: |
266 |
29357 |
0.01% |
|
|
Simple repeats: |
227937 |
10986398 |
1.95% |
|
|
Low complexity: |
56705 |
3054213 |
0.54% |
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